I am currently a senior research scientist (CRCN) among the Empenn team at INRIA Rennes - Bretagne Atlantique. I obtained my PhD in Computer Science at INRIA Sophia Antipolis, Asclepios team (now Epione). My post-doc took place at Harvard Medical School, in the Computational Radiology Laboratory at the Children's Hospital Boston. I obtained my habilitation for directing research (HDR) in june 2019 from the University of Rennes 1.

You will find on this website some information on my past and present research projects. In addition, this site provides some of the images produced from my research, and also software and templates I have contributed to or developed.

News

This news feed is not very well updated but I try to put here major news for the website. I have also recently added my twitter feed to provide more recent updates. If it does not appear, it might be due to your Adblock Plus being incompatible with the feed on Firefox or chrome. Deactivate it and it will appear back.

December 4, 2020 - New website design
I have finally revamped this website. New stuff has been added in the research section and here is a new design, more compatible with smartphones and tablets.
September 3, 2020 - Anima and anima scripts get a website and documentation
Along with the release of version 4.0 of Anima and Anima scripts, they finally get a website and a documentation. Check them out for updates and how to use them.
July 24, 2019 - Updated version of the thesis and HDR Latex template:
The Latex template I provide for writing PhD manuscripts has been updated following the recent modifications I made for my HDR. Feel free to check it out and use it.
June 19, 2019 - Research direction habilitation:
I have now successfully passed my habilitation thesis (French diploma to supervise PhD students). Feel free to take a look at the manuscript and presentation.
September 13, 2018 - MS lesion segmentation challenge article:
We are happy to announce that our long awaited article on the results on the MICCAI 2016 challenge on MS lesions segmentation is now out at Nature scientific reports. Feel free to have a look there
September 10, 2018 - Anima scripts:
We are opening the source code of scripts combining tools from Anima to perform processing of data, including registration, DTI processing, segmentation, quantitative imaging... It is named Anima scripts and available as a git repository on Github under an AGPL license. Look at the details on how to get it, together with Anima here.
March 19, 2018 - Brainhack Rennes:
We are proudly organizing Brainhack Rennes 2018, a part of the Brainhack global event. The event will take place at Inria in Rennes on April 25-26, 2018. More information is available and registration is opened on http://brainhack.irisa.fr.
March 2, 2018 - medInria 3.0:
A new release of medInria has come to life! With a lot of changes under the hood including the transition to a new plugin system, change to Qt5 and VTK8, as well as new plugins and an experimental pipeline composition framework. Check it out on http://med.inria.fr.
October 1, 2015 - Anima:
We are opening the source code of a large part of the research software developed in the Visages team, including registration, DTI processing, segmentation, quantitative imaging... It is named Anima and available as a git repository on Github under an AGPL license. Look at the details on how to get it here.