 |
 |
Olivier Commowick |
 |
 |
Publications Bibtex Entries
Thesis
@phdthesis{Commowick_PhD_2007,
Author = {Olivier Commowick},
Month = {feb},
Pdf = {http://olivier.commowick.org/articles/These.pdf},
School = {Universit{\'e} de Nice-Sophia Antipolis},
Title = {Cr{\'e}ation et Utilisation d'Atlas Anatomiques Num{\'e}riques pour la Radioth{\'e}rapie (Design and Use of Anatomical Atlases for Radiotherapy)},
Type = {Th{\`e}se de sciences (PhD Thesis)},
Year = {2007}
}
Journal Articles
@article{Bondiau_IJROBP_2005,
Author = {P.-Y. Bondiau and G. Malandain and S. Chanalet and P.-Y. Marcy and J.-L. Habrand and F. Fauchon and P. Paquis and A. Courdi and O. Commowick and I. Rutten and N. Ayache},
Doi = {10.1016/j.ijrobp.2004.08.055},
Journal = {Int J Radiat Oncol Biol Phys},
Month = {jan},
Number = {1},
Pages = {289-298},
Pdf = {http://olivier.commowick.org/articles/bondiau-ijrobp-2005.pdf},
Title = {Atlas-based Automatic Segmentation of {MR} Images: Validation Study on the Brainstem in Radiotherapy},
Volume = {61},
Year = {2005},
}
@article{Isambert_RO_2008,
Author = {Aur{\'e}lie Isambert and Fr{\'e}d{\'e}ric Dhermain and Fran{\c c}ois Bidault and Olivier Commowick and Pierre-Yves Bondiau and Gr{\'e}goire Malandain and Dimitri Lefkopoulos},
Doi = {10.1016/j.radonc.2007.11.030},
Journal = {Radiotherapy Oncology},
Month = {apr},
Number = {1},
Pages = {93-99},
Title = {Evaluation of an atlas-based automatic segmentation software for the delineation of brain organs at risk in a radiation therapy clinical context},
Volume = {87},
Year = {2008},
}
@article{Commowick_RO_2008,
Author = {Olivier Commowick and Vincent Gr{\'e}goire and Gr{\'e}goire Malandain},
Doi = {10.1016/j.radonc.2008.01.018},
Journal = {Radiotherapy Oncology},
Month = {may},
Number = {2},
Pages = {281-289},
Pdf = {http://olivier.commowick.org/articles/CommowickRO2008.pdf},
Title = {Atlas-Based Delineation of Lymph Node Levels in Head and Neck Computed Tomography Images},
Volume = {87},
Year = {2008},
}
@article{Commowick_Media_2008,
Author = {Olivier Commowick and Vincent Arsigny and Aur{\'e}lie Isambert and Jimena Costa and Fr{\'e}d{\'e}ric Dhermain and Fran{\c c}ois Bidault and Pierre-Yves Bondiau and Nicholas Ayache and Gr{\'e}goire Malandain},
Doi = {10.1016/j.media.2008.01.002},
Journal = {Medical Image Analysis},
Month = {aug},
Number = {4},
Pages = {427-441},
Pdf = {http://olivier.commowick.org/articles/CommowickMedia2008.pdf},
Title = {An Efficient Locally Affine Framework for the Smooth Registration of Anatomical Structures},
Volume = {12},
Year = {2008},
}
@article{Arsigny_JMIV_2009,
Author = {Vincent Arsigny and Olivier Commowick and Nicholas Ayache and Xavier Pennec},
Doi = {10.1007/s10851-008-0135-9},
Journal = {Journal of Mathematical Imaging and Vision},
Month = {jan},
Number = {2},
Pages = {222-238},
Pdf = {http://olivier.commowick.org/articles/ArsignyJMIV2009.pdf},
Title = {A Fast and Log-Euclidean Polyaffine Framework for Locally Linear Registration},
Volume = {33},
Year = {2009},
}
@article{Commowick_TMI_2009,
Author = {Olivier Commowick and Simon K. Warfield},
Doi = {10.1109/TMI.2008.2010438},
Journal = {IEEE Transactions on Medical Imaging},
Month = {jun},
Number = {6},
Pages = {838-846},
Pdf = {http://olivier.commowick.org/articles/CommowickTMI2009.pdf},
Title = {A Continuous {STAPLE} for Scalar, Vector and Tensor Images: An Application to {DTI} Analysis},
Volume = {28},
Year = {2009},
}
@article{Schachter_Epilepsy_2009,
Author = {S. C. Schachter and J. Guttag and S. J. Schiff and D. L. Schomer and Summit Contributors},
Doi = {10.1016/j.yebeh.2009.06.028},
Journal = {Epilepsy and Behavior},
Month = {sep},
Number = {1},
Pages = {3-46},
Title = {Advances in the Application of Technology to Epilepsy: The {CIMIT/NIO} Epilepsy Innovation Summit},
Volume = {16},
Year = {2009},
}
@article{Sims_RO_2009,
Author = {R. Sims and A. Isambert and V. Gr{\'e}goire and F. Bidault and L. Fresco and J. Sage and J. Mills and J. Bourhis and D. Lefkopoulos and O. Commowick and M. Benkebil and G. Malandain},
Doi = {10.1016/j.radonc.2009.08.013},
Journal = {Radiotherapy Oncology},
Month = {dec},
Number = {3},
Pages = {474-478},
Title = {A Pre-Clinical Assessment of an Atlas-Based Automatic Segmentation Tool for the Head and Neck},
Volume = {93},
Year = {2009},
}
@article{Krishnan_PedNeuro_2010,
Author = {M. L. Krishnan and O. Commowick and S. S. Jeste and N. Weisenfeld and A. Hans and M.C. Gregas and M. Sahin and S. K. Warfield},
Journal = {Pediatric Neurology},
Month = {feb},
Number = {2},
Pages = {101-106},
Title = {Diffusion Features of White Matter in Tuberous Sclerosis with Tractography},
Volume = {42},
Year = {2010}
}
@article{Commowick_TMI_2010,
Author = {Olivier Commowick and Simon K. Warfield},
Date-Added = {2009-12-17 10:51:16 +0100},
Date-Modified = {2010-01-06 14:43:52 +0100},
Month = {mar},
Number = {3},
Pages = {771-780},
Volume = {29},
Journal = {IEEE Transactions on Medical Imaging},
Pdf = {http://olivier.commowick.org/articles/CommowickTMI2010.pdf},
Title = {Estimation of Inferential Uncertainty in Assessing Expert Segmentation Performance from {STAPLE}},
Year = {2010}
}
@ARTICLE{Ramus_CR_2010,
AUTHOR = {L. Ramus and J. Thariat and P.-Y. Marcy and Y. Pointreau and G. Bera and O. Commowick and G. Malandain},
JOURNAL = {Cancer/Radioth\'erapie},
TITLE = {Outils de contourage, utilisation et construction d'atlas anatomiques : exemples des cancers de la tete et du cou},
YEAR = {2010},
NOTE = {In french},
VOLUME = {In Press},
PDF = {http://www.inria.fr/sophia/asclepios/Publications/Liliane.Ramus/cancerRadiotherapie10_lramus.pdf}
}
Peer Reviewed Full Length Conference Papers
@inproceedings{Stefanescu_Miccai_2004,
Author = {Radu Stefanescu and Olivier Commowick and Gr{\'e}goire Malandain and Pierre-Yves Bondiau and Nicholas Ayache and Xavier Pennec},
Booktitle = {Proceedings of {MICCAI 2004}},
Month = {sep},
Pages = {704-711},
Pdf = {http://olivier.commowick.org/articles/MICCAI04_paper.pdf},
Series = {LNCS},
Title = {Non-Rigid atlas to subject registration with pathologies for conformal radiotherapy},
Volume = {3216},
Year = {2004}
}
@inproceedings{Commowick_Miccai_2005,
Annote = {Erratum: The tensor $W_j$ should be defined as $W_j = J^T.J$ and not as $W_j = J.J^T$.},
Author = {Olivier Commowick and Radu Stefanescu and Pierre Fillard and Vincent Arsigny and Nicholas Ayache and Xavier Pennec and Gr{\'e}goire Malandain},
Booktitle = {Proceedings of {MICCAI 2005, Part II}},
Month = {oct},
Pages = {927-934},
Pdf = {http://olivier.commowick.org/articles/CommowickMiccai05.pdf},
Series = {LNCS},
Title = {Incorporating Statistical Measures of Anatomical Variability in Atlas-to-Subject Registration for Conformal Brain Radiotherapy},
Volume = {3750},
Year = {2005}
}
@inproceedings{Arsigny_WBIR_2006,
Author = {Vincent Arsigny and Olivier Commowick and Xavier Pennec and Nicholas Ayache},
Booktitle = {Proceedings of {WBIR'06}},
Month = {jul},
Pages = {120-127},
Pdf = {http://www.inria.fr/sophia/asclepios/Publications/Arsigny/arsigny_wbir.pdf},
Series = {LNCS},
Title = {A Log-Euclidean Polyaffine Framework for Locally Rigid or Affine Registration},
Volume = {4057},
Year = {2006}
}
@inproceedings{Arsigny_MFCA_2006,
Author = {Vincent Arsigny and Olivier Commowick and Xavier Pennec and Nicholas Ayache},
Booktitle = {Proc. of the International Workshop on the Mathematical Foundations of Computational Anatomy {(MFCA-2006)}},
Month = {oct},
Pages = {16-17},
Pdf = {http://www.inria.fr/sophia/asclepios/Publications/Arsigny/arsigny_mfca.pdf},
Title = {Statistics on Diffeomorphisms in A Log-Euclidean Framework},
Year = {2006}
}
@inproceedings{Arsigny_Miccai_2006,
Author = {Vincent Arsigny and Olivier Commowick and Xavier Pennec and Nicholas Ayache},
Booktitle = {Proceedings of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention {(MICCAI'06), Part I}},
Month = {oct},
Pages = {924-931},
Pdf = {http://www.inria.fr/sophia/asclepios/Publications/Arsigny/arsigny_miccai06.pdf},
Series = {LNCS},
Title = {A Log-Euclidean Framework for Statistics on Diffeomorphisms},
Volume = {4190},
Year = {2006}
}
@inproceedings{Commowick_ISBI_2006,
Author = {Olivier Commowick and Vincent Arsigny and Jimena Costa and Nicholas Ayache and Gr{\'e}goire Malandain},
Booktitle = {Proceedings of the Third {IEEE} International Symposium on Biomedical Imaging {(ISBI 2006)}},
Month = {apr},
Pages = {478-481},
Pdf = {http://olivier.commowick.org/articles/CommowickIsbi2006.pdf},
Title = {An Efficient Locally Affine Framework for the Registration of Anatomical Structures},
Year = {2006}
}
@inproceedings{Commowick_SA2PM_2006,
Author = {Olivier Commowick and Gr{\'e}goire Malandain},
Booktitle = {Proceedings of the {SA2PM} Workshop (From Statistical Atlases to Personalized Models), held in conjunction with {MICCAI'06}},
Month = {oct},
Pdf = {http://olivier.commowick.org/articles/CommowickMiccai2006.pdf},
Title = {Evaluation of Atlas Construction Strategies in the Context of Radiotherapy Planning},
Year = {2006}
}
@inproceedings{Commowick_Miccai_2007,
Author = {Olivier Commowick and Gr{\'e}goire Malandain},
Booktitle = {Proceedings of the 10th International Conference on Medical Image Computing and Computer Assisted Intervention {(MICCAI'07), Part II}},
Month = {oct},
Pages = {203-210},
Pdf = {http://olivier.commowick.org/articles/CommowickMiccai2007.pdf},
Series = {LNCS},
Title = {Efficient Selection of the Most Similar Image in a Database for Critical Structures Segmentation},
Volume = {4792},
Year = {2007}
}
@inproceedings{Styner_Miccai_2008,
Author = {M. Styner and J. Lee and B. Chin and M.S. Chin and O. Commowick and H. Tran and S. Markovic-Plese and V. Jewells and S.K. Warfield},
Booktitle = {{MIDAS Journal, Special Issue on 2008 MICCAI Workshop - MS Lesion Segmentation}},
Month = {sep},
Pages = {1-5},
Title = {{3D} Segmentation in the Clinic: A Grand Challenge {II: MS} Lesion Segmentation},
Year = {2008}
}
@inproceedings{Commowick_Miccai_2008,
Author = {Olivier Commowick and Pierre Fillard and Olivier Clatz and Simon K. Warfield},
Booktitle = {Proceedings of the 11th International Conference on Medical Image Computing and Computer Assisted Intervention {(MICCAI'08), Part I}},
Month = {sep},
Pages = {975-982},
Pdf = {http://olivier.commowick.org/articles/CommowickMiccai2008.pdf},
Series = {LNCS},
Title = {Detection of {DTI} White Matter Abnormalities in Multiple Sclerosis Patients},
Volume = {5241},
Year = {2008}
}
@inproceedings{Commowick_IPMI_2009,
Author = {Olivier Commowick and Simon K. Warfield},
Booktitle = {Proceedings of the 21st International Conference on Information Processing in Medical Imaging},
Month = {jul},
Pages = {701-712},
Pdf = {http://olivier.commowick.org/articles/Commowick_IPMI_2009.pdf},
Series = {LNCS},
Title = {Estimation of Inferential Uncertainty in Assessing Expert Segmentation Performance from {STAPLE}},
Volume = {5636},
Year = {2009}
}
@inproceedings{Scherrer_StatWorkshop_2009,
Author = {B. Scherrer and O. Commowick and S.K. Warfield},
Booktitle = {Statistical modeling and detection issues in intra- and inter-subject functional MRI data analysis, MICCAI 2009 Workshop},
Title = {Exploring the temporal quality of {fMRI} acquisitions},
Year = {2009}
}
@inproceedings{Commowick_IADB_2009,
Author = {O. Commowick and N. I. Weisenfeld and H. Als and G. B. McAnulty and S. Butler and L. Lightbody and R. M. Robertson and S. K. Warfield},
Booktitle = {Proceedings of the Workshop on Image Analysis for the Developing Brain (held in conjunction with MICCAI'09)},
Month = {sep},
Pdf = {http://olivier.commowick.org/articles/CommowickIADB2009.pdf},
Title = {Evaluation of White Matter in Preterm Infants With Fetal Growth Restriction},
Year = {2009}
}
@inproceedings{Commowick_Miccai_2009,
Author = {Olivier Commowick and Simon K. Warfield and Gr{\'e}goire Malandain},
Booktitle = {Proceedings of the 12th International Conference on Medical Image Computing and Computer Assisted Intervention {(MICCAI'09), Part II}},
Month = {sep},
Pages = {993-1000},
Pdf = {http://olivier.commowick.org/articles/CommowickMiccai2009.pdf},
Series = {LNCS},
Title = {Using Frankenstein's Creature Paradigm to Build a Patient Specific Atlas},
Volume = {5762},
Year = {2009}
}
@inproceedings{Ramus_Miccai_2010,
AUTHOR = {Liliane Ramus and Olivier Commowick and Gr\'egoire Malandain},
BOOKTITLE = {Medical Image Computing and Computer-Assisted Intervention (MICCAI'10)},
TITLE = {Construction of Patient Specific Atlases from Locally Most Similar Anatomical Pieces},
YEAR = {2010},
MONTH = {September},
SERIES = {LNCS},
PDF = {http://olivier.commowick.org/articles/RamusMiccai2010.pdf},
NOTE = {To appear}
}
@inproceedings{Commowick_Miccai_2010,
AUTHOR = {Olivier Commowick and Simon K. Warfield},
BOOKTITLE = {Medical Image Computing and Computer-Assisted Intervention (MICCAI'10)},
TITLE = {Incorporating Priors On Expert Performance Parameters for Segmentation Validation and Label Fusion: a Maximum A Posteriori STAPLE},
YEAR = {2010},
MONTH = {September},
SERIES = {LNCS},
PDF = {http://olivier.commowick.org/articles/CommowickMiccai2010.pdf},
NOTE = {To appear}
}
Abstract Conferences
@inproceedings{Commowick_SFPM_2004,
Author = {Olivier Commowick and Gr{\'e}goire Malandain and Pierre-Yves Bondiau},
Booktitle = {Congr{\`e}s de la Soci{\'e}t{\'e} Francaise de Physique M{\'e}dicale (SFPM)},
Month = {jun},
Title = {Segmentation automatique des tissus c{\'e}r{\'e}braux en pr{\'e}sence de structures pathologiques},
Year = {2004}
}
@inproceedings{Bondiau_RSNA_2004,
Author = {P.-Y. Bondiau and G. Malandain and O. Commowick and P.-Y. Marcy and S. Chanalet and N. Ayache},
Booktitle = {90th Scientific Assembly and Annual Meeting of the Radiological Society of North America ({RSNA})},
Title = {Atlas-based Automatic Segmentation of {MR} Images: Validation Study on the Brainstem in Radiotherapy},
Year = {2004}
}
@inproceedings{Isambert_ESTRO_2005,
Author = {A. Isambert and F. Dhermain and A. Beaudre and G. Malandain and O. Commowick and J.C. Diaz and F. Bidault and P.Y. Bondiau and J. Bourhis and M. Ricard and D. Lefkopoulos},
Booktitle = {Acts of the 24th European Society for Therapeutic Radiology and Oncology (ESTRO 2005)},
Title = {Requirements for the use of an atlas-based automatic segmentation for delineation of Organs at risk (OAR) in conformal radiotherapy (CRT): quality assurance (QA) and preliminary results for 22 adult patients with primary brain tumors},
Year = {2005}
}
@inproceedings{Isambert_SFPM_2006,
Author = {A. Isambert and F. Dhermain and G. Bonniaud and F. Bidault and A. Beaudre and G. Malandain and O. Commowick and J.C. Diaz and M. Ricard and J. Bourhis and D. Lefkopoulos},
Booktitle = {Congr{\`e}s annuel de la Soci{\'e}t{\'e} Fran{\c c}aise des Physiciens M{\'e}dicaux (SFPM)},
Month = {jun},
Title = {Evaluation d'un logiciel de recalage d'images multimodal et d'un outil de segmentation automatique des organes {\`a} risque (OAR) intra-cr{\^a}niens en situation clinique d'une radioth{\'e}rapie conformationnelle 3D (RTC3D)},
Year = {2006}
}
@inproceedings{Isambert_ASTRO_2006,
Author = {A. Isambert and F. Dhermain and F. Bidault and G. Bonniaud and R. Lery and G. Malandain and O. Commowick and J.C. Diaz and J. Bourhis and D. Lefkopoulos},
Booktitle = {Proceedings of the 48th Annual Meeting of the American Society for Therapeutic Radiology and Oncology (ASTRO)},
Title = {Evaluation of Multimodality Image Registration Software and Atlas-based Automatic Segmentation for Delineation of Organs at Risk (OAR) in the Brain in Conformal Radiotherapy (CRT)},
Year = {2006}
}
@inproceedings{Isambert_Estro_2007,
Author = {A. Isambert and V. Gr{\'e}goire and F. Bidault and G. Calais and O. Commowick and G. Malandain and J.B. Ruaud and M. Tomsej and C. Bramoulle and J. Bourhis and D. Lefkopoulos},
Booktitle = {Acts of the 26th European Society for Therapeutic Radiology and Oncology {(ESTRO)}},
Title = {{Atlas-based automatic segmentation (ABAS) of head and neck (H&N) structures in conformal radiotherapy (CRT) : atlas development and preliminary results in clinical context}},
Year = {2007}
}
Internal Reports
@techreport{Arsigny_RR_2006,
Author = {Vincent Arsigny and Olivier Commowick and Xavier Pennec and Nicholas Ayache},
Institution = {INRIA Sophia Antipolis},
Month = {mar},
Pdf = {http://www.inria.fr/sophia/asclepios/Publications/Arsigny/arsigny_rr_polyaffine.pdf},
Title = {A Fast and Log-Euclidean Polyaffine Framework for Locally Affine Registration},
Type = {Research Report RR-5865},
Year = {2006}
}
Miscellaneous
@misc{Commowick_MT_2003,
Author = {Olivier Commowick},
Howpublished = {Master's Thesis},
Month = {oct},
Title = {Utilisation d'atlas anatomiques num{\'e}riques pour la canc{\'e}rologie},
Year = {2003}
}
Designed for Safari, Firefox and MSIE. If you encounter any problem for viewing it, please contact me. 
