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Publications


Thesis

  1. Création et Utilisation d'Atlas Anatomiques Numériques pour la Radiothérapie (Design and Use of Anatomical Atlases for Radiotherapy)
    O. Commowick. Thèse de sciences (PhD Thesis). Université de Nice-Sophia Antipolis. February 2007. pdf [bibtex-entry]
     

Journal articles

  1. Estimation of Inferential Uncertainty in Assessing Expert Segmentation Performance from STAPLE
    O. Commowick and S. K. Warfield.
    IEEE Transactions on Medical Imaging, 29(3):771-780, March 2010. pdf [bibtex-entry]
     
  2. Diffusion Features of White Matter in Tuberous Sclerosis With Tractography
    M. L. Krishnan, O. Commowick, S. S. Jeste, N. Weisenfeld, A. Hans, M. C. Gregas, M. Sahin and S. K. Warfield.
    Pediatric Neurology, 42(2):101-106, February 2010. doi [bibtex-entry]
     
  3. A Pre-Clinical Assessment of an Atlas-Based Automatic Segmentation Tool for the Head and Neck
    R. Sims, A. Isambert, V. Gregoire, F. Bidault, L. Fresco, J. Sage, J. Mills, J. Bourhis, D. Lefkopoulos, O. Commowick, M. Benkebil, and G. Malandain.
    Radiotherapy Oncology, 93(3):474-478, December 2009. doi [bibtex-entry]
     
  4. Advances in the Application of Technology to Epilepsy: The CIMIT/NIO Epilepsy Innovation Summit
    S. C. Schacter, J. Guttag, S. J. Schiff, D. L. Schomer, Summit Contributors.
    Epilepsy and Behavior, 16(1):3-46, September 2009. doi [bibtex-entry]
     
  5. A Continuous STAPLE for Scalar, Vector and Tensor Images: An Application to DTI Analysis
    O. Commowick and S. K. Warfield.
    IEEE Transactions on Medical Imaging, 28(6):838-846, June 2009. pdf doi [bibtex-entry]
     
  6. A Fast and Log-Euclidean Polyaffine Framework for Locally Linear Registration
    V. Arsigny, O. Commowick, N. Ayache and X. Pennec.
    Journal of Mathematical Imaging and Vision, 33(2):222-238, January 2009. pdf doi [bibtex-entry]
     
  7. An Efficient Locally Affine Framework for the Smooth Registration of Anatomical Structures
    O. Commowick, V. Arsigny, A. Isambert, J. Costa, F. Dhermain, F. Bidault, P.-Y. Bondiau, N. Ayache and G. Malandain.
    Medical Image Analysis, 12(4):427-441, August 2008. pdf doi [bibtex-entry]
     
  8. Atlas-Based Delineation of Lymph Node Levels in Head and Neck Computed Tomography Images
    O. Commowick, V. Grégoire and G. Malandain.
    Radiotherapy Oncology, 87(2):281-289, May 2008. pdf doi [bibtex-entry]
     
  9. Evaluation of an atlas-based automatic segmentation software for the delineation of brain organs at risk in a radiation therapy clinical context.
    A. Isambert, F. Dhermain, F. Bidault, O. Commowick, P.-Y. Bondiau, G. Malandain and D. Lefkopoulos.
    Radiotherapy Oncology, 87(1):93-99, April 2008. doi [bibtex-entry]
     
  10. Atlas-based Automatic Segmentation of MR Images: Validation Study on the Brainstem in Radiotherapy
    P.-Y. Bondiau, G. Malandain, S. Chanalet, P.-Y. Marcy, J.-L. Habrand, F. Fauchon, P. Paquis, A. Courdi, O. Commowick, I. Rutten, and N. Ayache.
    Int J Radiat Oncol Biol Phys, 61(1):289-98, January 2005. pdf doi [bibtex-entry]
     

Peer Reviewed Full Length Conference Papers

  1. Using Frankenstein's Creature Paradigm to Build a Patient Specific Atlas
    O. Commowick, S. K. Warfield and G. Malandain.
    In Proceedings of the 12th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'09), Part II, volume 5762 of LNCS, pages 993-1000, September 2009. pdf [bibtex-entry]
     
  2. Evaluation of White Matter in Preterm Infants With Fetal Growth Restriction
    O. Commowick, N. I. Weisenfeld, H. Als, G. B. McAnulty, S. Butler, L. Lightbody, R. M. Robertson and S. K. Warfield.
    In Proceedings of the Workshop on Image Analysis for the Developing Brain, held in conjunction with MICCAI'09, September 2009. pdf [bibtex-entry]
     
  3. Exploring the temporal quality of fMRI acquisitions
    B. Scherrer, O. Commowick and S. K. Warfield.
    In Proceedings of Statistical modeling and detection issues in intra- and inter-subject functional MRI data analysis, MICCAI '09 Workshop, September 2009. [bibtex-entry]
     
  4. Estimation of Inferential Uncertainty in Assessing Expert Segmentation Performance from STAPLE
    O. Commowick and S. K. Warfield.
    In Proceedings of the 21st International Conference on Information Processing in Medical Imaging, volume 5636 of LNCS, pages 701-712, 2009. pdf [bibtex-entry]
     
  5. Detection of DTI White Matter Abnormalities in Multiple Sclerosis Patients
    O. Commowick, P. Fillard, O. Clatz and S. K. Warfield.
    In Proceedings of the 11th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'08), Part I, volume 5241 of LNCS, pages 975-982, September 2008. pdf [bibtex-entry]
     
  6. 3D Segmentation in the Clinic: A Grand Challenge II: MS lesion segmentation
    M. Styner, J. Lee, B. Chin, M.S. Chin, O. Commowick, H. Tran, S. Markovic-Plese, V. Jewells and S.K. Warfield.
    MIDAS Journal, Special Issue on 2008 MICCAI Workshop - MS Lesion Segmentation, pages 1-5, September 2008. Available online. [bibtex-entry]
     
  7. Efficient Selection of the Most Similar Image in a Database for Critical Structures Segmentation
    O. Commowick and G. Malandain.
    In Proceedings of the 10th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'07), Part II, volume 4792 of LNCS, pages 203-210, October 2007. pdf [bibtex-entry]
     
  8. Evaluation of Atlas Construction Strategies in the Context of Radiotherapy Planning
    O. Commowick and G. Malandain.
    In Proceedings of the SA2PM Workshop (From Statistical Atlases to Personalized Models), held in conjunction with MICCAI '06, October 2006. pdf [bibtex-entry]
     
  9. An Efficient Locally Affine Framework for the Registration of Anatomical Structures
    O. Commowick, V. Arsigny, J. Costa, N. Ayache, and G. Malandain.
    In Proceedings of the Third IEEE International Symposium on Biomedical Imaging (ISBI 2006), pages 478-481, April 2006. pdf [bibtex-entry]
     
  10. A Log-Euclidean Framework for Statistics on Diffeomorphisms
    V. Arsigny, O. Commowick, X. Pennec, and N. Ayache.
    In Proceedings of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part I, volume 4190 of LNCS, pages 924-931, 2-4 October 2006. pdf [bibtex-entry]
     
  11. Statistics on Diffeomorphisms in A Log-Euclidean Framework
    V. Arsigny, O. Commowick, X. Pennec, and N. Ayache.
    In X. Pennec and S. Joshi, editors, Proc. of the International Workshop on the Mathematical Foundations of Computational Anatomy (MFCA-2006), pages 16-17, October 2006. pdf [bibtex-entry]
     
  12. A Log-Euclidean Polyaffine Framework for Locally Rigid or Affine Registration
    V. Arsigny, O. Commowick, X. Pennec, and N. Ayache.
    In Proceedings of WBIR'06, volume 4057 of LNCS, Utrecht, The Netherlands, pages 120-127, July 2006. pdf [bibtex-entry]
     
  13. Incorporating Statistical Measures of Anatomical Variability in Atlas-to-Subject Registration for Conformal Brain Radiotherapy
    O. Commowick, R. Stefanescu, P. Fillard, V. Arsigny, N.Ayache, X. Pennec, and G. Malandain.
    In Proceedings of MICCAI 2005, Part II, Volume 3750 of LNCS, pages 927-934, October 2005. pdf doi [Annotation] [bibtex-entry]
     
  14. Non-Rigid atlas to subject registration with pathologies for conformal radiotherapy
    R. Stefanescu, O. Commowick, G. Malandain, P.-Y. Bondiau, N. Ayache and X. Pennec.
    In Proceedings of MICCAI 2004, volume 3216 of LNCS, pages 704-711, September 2004. pdf doi [bibtex-entry]
     

Abstract Conferences

  1. Atlas-based automatic segmentation (ABAS) of head and neck (H&N) structures in conformal ra- diotherapy (CRT) : atlas development and preliminary results in clinical context
    A. Isambert, V. Grégoire, F. Bidault, G. Calais, O. Commowick, G. Malandain, J.B. Ruaud, M. Tomsej, C. Bramoulle, J. Bourhis, and D. Lefkopoulos.
    In Acts of the 26th European Society for Therapeutic Radiology and Oncology (ESTRO), 2007. [bibtex-entry]
     
  2. Evaluation of Multimodality Image Registration Software and Atlas-based Automatic Segmentation for Delineation of Organs at Risk (OAR) in the Brain in Conformal Radiotherapy (CRT)
    A. Isambert, F. Dhermain, F. Bidault, G. Bonniaud, R. Lery, G. Malandain, O. Commowick, J.C. Diaz, J. Bourhis, and D. Lefkopoulos.
    In 48th Annual Meeting of the American Society for Therapeutic Radiology and Oncology (ASTRO), 2006. [bibtex-entry]
     
  3. Evaluation d'un logiciel de recalage d'images multimodal et d'un outil de segmentation automatique des organes à risque (OAR) intra-crâniens en situation clinique d'une radiothérapie conformationnelle 3D (RTC3D)
    A. Isambert, F. Dhermain, G. Bonniaud, F. Bidault, A. Beaudre, G. Malandain, O. Commowick, J.C. Diaz, M. Ricard, J. Bourhis, and D. Lefkopoulos.
    In Congrès annuel de la Société Française des Physiciens Médicaux (SFPM), June 2006. [bibtex-entry]
     
  4. Requirements for the use of an atlas-based automatic segmentation for delineation of Organs at risk (OAR) in conformal radiotherapy (CRT): quality assurance (QA) and preliminary results for 22 adult patients with primary brain tumors
    A. Isambert, F. Dhermain, A. Beaudre, G. Malandain, O. Commowick, J.C. Diaz, F. Bidault, P.Y. Bondiau, J. Bourhis, M. Ricard, and D. Lefkopoulos.
    In Acts of the 24th European Society for Therapeutic Radiology and Oncology (ESTRO 2005), 2005. [bibtex-entry]
     
  5. Atlas-based Automatic Segmentation of MR Images: Validation Study on the Brainstem in Radiotherapy
    P.-Y. Bondiau, G. Malandain, O. Commowick, P.-Y. Marcy, S. Chanalet, and N. Ayache.
    In 90th Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA), 2004. [bibtex-entry]
     
  6. Segmentation automatique des tissus cérébraux en présence de structures pathologiques
    O. Commowick, G. Malandain and P.-Y. Bondiau.
    Congrès Société Francaise de Physique Médicale (SFPM), June 2004. [bibtex-entry]
     

Internal Reports

  1. A Fast and Log-Euclidean Polyaffine Framework for Locally Affine Registration
    V. Arsigny, O. Commowick, X. Pennec, and N. Ayache.
    Research Report RR-5865, INRIA Sophia-Antipolis, March 2006. pdf [bibtex-entry]
     

Miscellaneous

  1. Utilisation d'atlas anatomiques numériques pour la cancérologie.
    Olivier Commowick.
    Rapport de DEA , DEA MVA, ENS Cachan, October 2003. [bibtex-entry]
     
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